연구업적
49. Bae Young Choi, Donghwan Shim, Fantao Kong, Pascaline Auroy, Yuree Lee, Yonghua Li‐Beisson, Youngsook Lee,
Yasuyo Yamaoka (2022) The Chlamydomonas transcription factor MYB1 mediates lipid accumulation under nitrogen
depletion. New Phytologist. Online publication. https://doi.org/10.1111/nph.18141
48. Ju Young Ahn, Jaewook Kim, Ju Yeon Yang, Hyun Ju Lee, Soyun Kim, Kwang-Soo Cho, Sang-Ho Lee, Jin-Hyun Kim,
Tae-Ho Lee, Yoonkang Hur, Donghwan Shim† (2022) Comparative Transcriptome Analysis between Two Potato
Cultivars in Tuber Induction to Reveal Associated Genes with Anthocyanin Accumulation. International Journal of
Molecular Sciences 23(7), 3681
47. Bae Young Choi, Hanul Kim, Donghwan Shim, Sunghoon Jang, Yasuyo Yamaoka, Seungjun Shin, Takashi Yamano,
Masataka Kajikawa, EonSeon Jin, Hideya Fukuzawa, Youngsook Lee (2022) The Chlamydomonas bZIP transcription
factor BLZ8 confers oxidative stress tolerance by inducing the carbon-concentrating mechanism. The Plant Cell 34(2),
910-926
46. Jinsoo Kim, Woo-Ri Shin, Yang-Hoon Kim, Donghwan Shim†, Hojin Ryu† (2021) Functional characterization of
gibberellin signaling-related genes in Panax ginseng. Journal of Plant Biotechnology 48(3), 148-155
45. Il-Hwan Lee, Ho Soo Kim, Ki Jung Nam, Kang-Lok Lee, Jung-Wook Yang, Sang-Soo Kwak, Jeung Joo Lee, Donghwan
Shim†, Yun-Hee Kim (2021) The defense response involved in sweetpotato resistance to root-knot nematode
Meloidogyne incognita: comparison of root transcriptomes of resistant and susceptible sweetpotato cultivars with
respect to induced and constitutive defense responses. Frontiers in Plant Science 12, 828
44. Hyejin An, Hwa-Yong Lee, Donghwan Shim, Seong Ho Choi, Hyunwoo Cho, Tae Kyung Hyun, Ick-Hyun Jo, Jong-Wook
Chung (2021) Development of CAPS Markers for Evaluation of Genetic Diversity and Population Structure in the
Germplasm of Button Mushroom (Agaricus bisporus) Journal of Fungi 7(5), 375
43. Hye-In Kang, Chae-Bin Lee, Soon-Ho Kwon, Ji-Min Park, Kyu-Suk Kang, Donghwan Shim† (2021) Comparative
transcriptome analysis during developmental stages of direct somatic embryogenesis in Tilia amurensis Rupr.
Scientific reports 11(1), 1-10
42. Soon-Ho Kwon, Yang-Gil Kim, Hye-In Kang, Donghwan Shim, Kyu-Suk Kang (2021) Morphology of strobili at different
development positions and cone and seed characteristics of Pinus densiflora f. multicaulis. Dendrobiology 85, 51-59
41. Dong-Hwan Shim, Yun-Hee Kim (2020) Isolation and Expression Analysis of a WRKY Transcription Factor in Sweet
potato. Journal of Agriculture & Life Science 54(4), 1-5
40. In Sik Kim, Kyung Mi Lee, Donghwan Shim, Jin Jung Kim, Hye-In Kang (2020) Plus Tree Selection of Quercus salicina
Blume and Q. glauca Thunb. and Its Implications in Evergreen Oaks Breeding in Korea. Forests 11(7), 735
39. Sang Hyeon Lee, Donghwan Shim*, Kang‑Lok Lee, Ki Jung Nam, Jung‑Wook Yang, Jeung Joo Lee, Yun‑Hee Kim (2020)
Expression analysis of sweetpotato NADPH oxidase‑encoding Rboh genes in response to infection with the root‑knot
nematode Meloidogyne incognita. Plant Biotechnology Reports 14:635-642
38. Hyemin Kim*, Donghwan Shim*, Suyun Moon, Jinsu Lee, Wonsil Bae, Hyunmo Choi, Kyunghwan Kim, Hojin Ryu (2019)
Transcriptional network regulation of the brassinosteroid signaling pathway by the BES1–TPL–HDA19 co-repressor
complex. Planta 250(4):1371-1377
37. Min-Ha Kim, Jin-Seong cho, Hyung-Woo Jeon, Kanidta Sangsawang, Donghwan Shim, YounIm Choi, Eung-Jun Park,
Hyoshin Lee, and Jae-Heung Ko (2019) Wood Transcriptome Profiling Identifies Critical Pathway Genes of Secondary
Wall Biosynthesis and Novel Regulators for Vascular Cambium Development in Populus. Genes 10(690)
36. Il Hwan Lee, Hyerim Han, Young Ho Koh, In Sik Kim, Seok-Woo Lee, and Donghwan Shim† (2019) Comparative
Transcriptome Analysis of Pinus densiflora Following Inoculation with Pathogenic (Bursaphelenchus xylophilus) or
Non-pathogenic Nematodes (B. thailandae). Scientific reports 9:12180
35. Yeon Woo Sung*, Il Hwan Lee*, Donghwan Shim*, Kang-Lok Lee, Ki Jung Nam, Jung-Wook Yang, Jeung Joo Lee, Sang-
Soo Kwak, Yun-Hee Kim (2019) Transcriptomic changes in sweetpotato peroxidases in response to infection with the
root-knot nematode Meloidogyne incognita. Molecular Biology Reports 46(4):4555-4564
34. Hye-In Kang*, Hyun Oh Lee*, Il Hwan Lee, In Sik Kim, Seok-Woo Lee, Tae Jin Yang and Donghwan Shim† (2019)
Complete Chloroplast Genome of Pinus densiflora Siebold & Zucc. and Comparative Analysis with Five Pine Trees.
Forests 10(7):600
33. Jinsu Lee, Seahee Han, Hwa-Yong Lee, Bomi Jeong, Tae-Young Heo, Tae Kyung Hyun, Kyunghwan Kim, Byoung Il Je,
Horim Lee, Donghwan Shim, Soon Ju Park, Hojin Ryu (2019) Brassinosteroids facilitate xylem differentiation and wood
formation in tomato. Planta 249(5):1391-1403
32. Hee Chung, Jaebok Lee, Jinsu Gil, Yurry Um, Ji Hyun Kim, Min Yeong Hwang, Ho Bang Kim, Chang Pyo Hong, Shin Gi
Park, Donghwan Shim, Yi Lee (2019) Development of Polymorphic SSR Markers from Pinus densiflora (Pinaceae)
Natural Population in Korea. Plant Breeding and Biotechnology 7(1):67-71
31. Il Hwan Lee*, Donghwan Shim*, Jea Cheol Jeong*, Yeon Woo Sung, Ki Jung Nam, Jung-Wook Yang, Joon Ha, Jeung
Joo Lee, Yun-Hee Kim (2019) Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-resistant and
susceptible sweetpotato cultivars. Planta 249(2):431-444
30. Jin A Kim*, Donghwan Shim*, Shipra Kumari, Ha-eun Jung, Ki-Hong Jung, Heesu Jeong, WoeYeon Kim, SooIn Lee, Mi-
Jeong Jeong (2019) Transcriptome Analysis of Diurnal Gene Expression in Chinese Cabbage. Genes 10(2):130
29. Il Hwan Lee, Jinjoong Kim, Kwan-Soo Woo, Kyung-Hwan Jang, Yun-Hee Kim, Donghwan Shim† (2018) De novo
assembly and transcriptome analysis of the Pinus densiflora response to pine wilt disease in nature. Plant
Biotechnology Reports 12(3):229-236
28. Jinsu Lee*, Donghwan Shim*, Suyun Moon, Hyemin Kim, Wonsil Bae, Kyunghwan Kim, YangHoon Kim, Sung-Keun
Rhee, Chang Pyo Hong, Suk-Young Hong, Ye-Jin Lee, Jwakyung Sung, Hojin Ryu (2018) Genome-wide transcriptomic
analysis of BR-deficient micro-tom reveals correlations between drought stress tolerance and brassinosteroid signaling
in tomato. Plant Physiology and Biochemistry 127:553-560
27. Donghwan Shim, Ki Jung Nam, Yun-Hee Kim (2018) Analysis of Antioxidant Enzyme Activity During Seedling Growth
of Leymus chinensis Trin Under Salt and Dehydration Stresses. Journal of Life Science 28(7):772-777
26. Inchan Choi*, Parthiban Subramanian*, Donghwan Shim, Byung-Ju Oh, Bum-Soo Hahn (2017) RNA-Seq of plant-
parasitic RNA-seq of plant-parasitic nematode Meloidogyne incognita at various stages of its development. Frontiers in
genetics 8:190
25. Sebastin Raveendar, Jung-Ro Lee, Donghwan Shim, Gi-An Lee, Young-Ah Jeon, Gyu-Taek Cho, Kyung-Ho Ma, Sok-
Young Lee, Gi-Ho Sung, Jong-Wook Chung (2017) Comparative efficacy of four candidate DNA barcode regions for
identification of Vicia species. Plant Genetic Resources 15(4):286-295
24. Suyun Moon*, Hwa-Yong Lee*, Donghwan Shim*, Myungkil Kim, Kang-Hyeon Ka, Rhim Ryoo, Han-Gyu Ko, Chang-
Duck Koo, Jong-Wook Chung, Hojin Ryu (2017) Development and Molecular Characterization of Novel Polymorphic
Genomic DNA SSR Markers in Lentinula edodes. Mycobiology 45(2):105-109
23. Hwa-Yong Lee*, Suyun Moon*, Donghwan Shim*, Chang Pyo Hong, Yi Lee, Chang-Duck Koo, Jong-Wook Chung and
Hojin Ryu (2017) Development of 44 Novel Polymorphic SSR Markers for Determination of Shiitake Mushroom
(Lentinula edodes) Cultivars. Genes 8(109)
22. Thomas Lane, Teodora Best, Nicole Zembower, Jack Davitt, Nathan Henry, Yi Xu, Jennifer Koch, Haiying Liang, John
McGraw, Stephan Schuster, Donghwan Shim, Mark V. coggeshall, John E. Carlson, and Margaret E. Staton (2016) The
green ash transcriptome and identification of genes responding to abiotic and biotic stresses. BMC Genomics 17(1):702
21. Hyun Uk Kim, Kyeong-Ryeol Lee, Donghwan Shim, Jeong Hee Lee, Grace Q. Chen, and Seongbin Hwang (2016)
Transcriptome analysis and identification of genes associated with ω3 fatty acid biosynthesis in Perilla frutescens (L.)
var. frutescens. BMC Genomics 17:474
20. Donghwan Shim, Sebastin Raveendar, Jung-Ro Lee, Gi-An Lee, Na-Young Ro, Young-Ah Jeon, Gyu-Taek Cho, Ho-Sun
Lee, Kyung-Ho Ma, and Jong-Wook Chung (2016) The complete chloroplast genome of Capsicum frutescens
(Solanaceae). Applications in Plant Sciences 4(5):1600002
19. Donghwan Shim*, Sin-Gi Park*, Kangmin Kim*, Wonsil Bae, Gir Won Lee, Byeong-Suk Ha, Hyeon-Su Ro, Myungkil Kim,
Rhim Ryoo, Sung-Keun Rhee, Ill-Sup Nou, Chang-Duck Koo, Chang Pyo Hong, and Hojin Ryu (2016) Whole genome de
novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes. Journal
of Biotechnology 223:24-25
18. Ryeo Jin Kim, Hae Jin Kim, Donghwan Shim, and Mi Chung Suh (2016) Molecular and biochemical characterizations
of the monoacylglycerol lipase gene family of Arabidopsis thaliana. The Plant Journal 85:758-771.
17. Sebastin Raveendar, Young-Wang Na, Jung-Ro Lee, Donghwan Shim, Kyung-Ho Ma, SokYoung Lee and Jong-Wook
Chung (2015) The complete chloroplast genome of Capsicum annuum var. glabriusculum using Illumina sequencing.
Molecules 20(7):13080-13088.
16. Tao Pang*, Lili Guo*, Donghwan Shim*, Nathaniel Cannon, Sha Tang, Jinhuan Chen, Xinli Xia, Weilun Yin, John E.
Carlson (2015) Characterization of the Transcriptome of the Xerophyte Ammopiptanthus mongolicus Leaves under
Drought Stress by 454 Pyrosequencing. PLoS One 10(8): e0136495.
15. Diky S. Diningrat, Srinanan M. Widiyanto, Adi Pancoro, Iriawati, Donghwan Shim, Bhargavi Panchangam, Nicole
Zembower, and John E. Carlson (2015) Transcriptome of teak (Tectona grandis, Lf) in vegetative to generative stages
development. Journal of Plant Sciences. 10(1): 1-14
14. Diky S. Diningrat, Srinanan M. Widiyanto, Adi Pancoro, Iriawati, Donghwan Shim, Bhargavi Panchangam, Nicole
Zembower, and John E. Carlson (2015) Identification of Terminal Flowering1 (TFL1) Genes Associated with the Teak
(Tectona grandis) Floral Development Regulation Using RNA-seq. Research Journal of Botany 10(1):1-13
13. Donghwan Shim*, Jae-Heung Ko*, Won-Chan Kim, Qijun Wang, Daniel E. Keathley, KyungHwan Han (2014) A
molecular framework for seasonal growth-dormancy regulation in perennial plants. Horticulture Research. Nov 26; 1,
14059.
12. Diky S. Diningrat, Srinanan M. Widiyanto, Adi Pancoro, Iriawati, Donghwan Shim, Bhargavi Panchangam, Nicole
Zembower, and John E. Carlson (2014) Transcriptomes of teak (Tectona grandis, L.f) in vegetative to generative
transition stage development. International Journal of Innovation and Applied Studies. Nov 3; 9: 1416-1427.
11. Sangwoo Kim, Yasuyo Yamaoka, Hirofumi Ono, Hanul Kim, Donghwan Shim, Masayoshi Maeshima, Enrico Martinoia,
Edgar B. Cahoon, Ikuo Nishida, Youngsook Lee (2013) AtABCA9 transporter supplies fatty acids for lipid synthesis to the
endoplasmic reticulum. Proc Natl Acad Sci USA. 2013 Jan 8; 110(2):773-778.
10. Donghwan Shim*, Sangwoo Kim*, Young-Im Choi, Won-Yong Song, Jiyoung Park, Eun Soo Youk, Soon-Chun Jeong,
Enrico Martinoia, Eun-Woon Noh, Youngsook Lee (2013) Transgenic poplar trees expressing yeast cadmium factor 1
exhibit the characteristics necessary for the phytoremediation of mine tailing soil. Chemosphere 90(4):1478-1486.
9. Young Im Choi, Eun Woon Noh, Hae Jung Kim, Donghwan Shim (2013) Overexpression of poplar GSTU51 confers
selective tolerance to both mercury and methyl viologen but not to CDNB or cadmium in transgenic poplars. Plant
Biotechnology Reports 7(2):175-184.
8. Seung-Ryoung Jung, Jong Bae Seo, Donghwan Shim, Bertil Hille, Duk-Su Koh (2012) Actin cytoskeleton controls
movement of intracellular organelles in pancreatic duct epithelial cells. Cell Calcium 51(6):459-469.
7. Won-Yong Song*, Jiyoung Park*, David G. Mendoza-Cózatl*, Marianne Suter-Grotemeyer, Donghwan Shim, Stefan
Hörtensteiner, Markus Geisler, Barbara Weder, Philip A. Rea, Doris Rentsch, Julian I. Schroeder, Youngsook Lee, Enrico
Martinoia (2010) Arsenic tolerance in Arabidopsis is mediated by two ABCC-type phytochelatin transporters. Proc Natl
Acad Sci USA. 107(49):21187-21192.
6. Donghwan Shim, Jae-Ung Hwang, Joohyun Lee, Sichul Lee, Yunjung Choi, Gynheung An, Enrico Martinoia, Youngsook
Lee (2009) Orthologs of the Class A4 Heat Shock Transcription Factor HsfA4a Confer Cadmium Tolerance in Wheat and
Rice. Plant Cell 21(12):4031-4043.
5. Yu-Young Kim, Do-Young Kim, Donghwan Shim, Won-Yong Song, Joohyun Lee, Julian I. Schroeder, Sanguk Kim, Nava
Moran, Youngsook Lee (2008) Expression of the novel wheat gene TM20 confers enhanced cadmium tolerance to
bakers’ yeast. J Biol Chem. 283(23):15893-15902.
4. Hee Young Kang*, Donghwan Shim*, Sang Sun Kang, Soo-Ik Chang, Hak Yong Kim (2006) Protein kinase B inhibits
endostatin-induced apoptosis in HUVECs. J. Biochem. Mol. Biol. 39(1):97-104.
3. Won-Yong Song, Enrico Martinoia, Joohyun Lee, Dongwoo Kim, Do-Young Kim, Esther Vogt, Donghwan Shim, Kwan
Sam Choi, Inhwan Hwang, Youngsook Lee (2004) A novel family of cysrich membrane proteins mediates cadmium
resistance in Arabidopsis. Plant Physiol. 135(2):1027-1039.
2. Joohyun Lee*, Donghwan Shim*, Won-Yong Song, Inhwan Hwang, Youngsook Lee (2004) Arabidopsis
metallothioneins 2a and 3 enhance resistance to cadmium when expressed in Vicia faba guard cells. Plant Mol. Biol. 54
(6):805-815.
1. Donghwan Shim*, Hee Young Kang*, Byeong Wook Jeon, Sang Sun Kang, Soo-Ik Chang, Hak Yong Kim (2004) Protein
kinase B inhibits apoptosis induced by actinomycin D in ECV304 cells through phosphorylation of caspase 8. Arch.
Biochem. Biophys. 425(2):214-220.
* Equally contribution
† Corresponding author
